April 2011 Archives by author

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Starting: Fri Apr 1 04:07:06 EDT 2011
Ending: Sat Apr 30 19:19:55 EDT 2011
Messages: 181

[Bioperl-l] Standalone blast khush ........
[Bioperl-l] Standalone blast khush ........
[Bioperl-l] Standalone blast khush ........
[Bioperl-l] Bioperl-l Digest, Vol 96, Issue 28 khush ........
[Bioperl-l] StandAloneBlastPlus Question Veronica A.
[Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included John SJ Anderson
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Florent Angly
[Bioperl-l] Standalone blast Florent Angly
[Bioperl-l] Bioperl-l Digest, Vol 96, Issue 28 Florent Angly
[Bioperl-l] Species tree and partition Radhouane Aniba
[Bioperl-l] Re: GSoC/BioPerl Reorganization Project Siddhartha Basu
[Bioperl-l] Use of uninitialized value in length at Bio/DB/SeqFeature/Store/DBI/mysql.pm line 1062 Dan Bolser
[Bioperl-l] Question about Bio::Coordinate::Pair Dan Bolser
[Bioperl-l] Bio::Biblio::MedlineArticle.pm Kevin Brown
[Bioperl-l] last call for Google Summer of Code mentors Robert Buels
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Robert Buels
[Bioperl-l] Announcing OBF Google Summer of Code Accepted Students Robert Buels
[Bioperl-l] GSoC/BioPerl Reorganization Project Robert Buels
[Bioperl-l] GSoC/BioPerl Reorganization Project Robert Buels
[Bioperl-l] Question about Bio::Coordinate::Pair Robert Buels
[Bioperl-l] type=MyISAM & regression in Bio::DB::GFF Scott Cain
[Bioperl-l] Bio::DB::GFF/Postgres test failures Scott Cain
[Bioperl-l] Bio::DB::GFF/Postgres test failures Scott Cain
[Bioperl-l] Bio::DB::GFF/Postgres test failures Scott Cain
[Bioperl-l] Bio::DB::GFF/Postgres test failures Scott Cain
[Bioperl-l] Bio::DB::GFF/Postgres test failures Scott Cain
[Bioperl-l] Bio::DB::GFF/Postgres test failures Scott Cain
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Scott Cain
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Scott Cain
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Scott Cain
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Scott Cain
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Scott Cain
[Bioperl-l] Clean handling of SQLite choice when running ./Build test Scott Cain
[Bioperl-l] Clean handling of SQLite choice when running ./Build test Scott Cain
[Bioperl-l] GD version required/Align::Graphics (was: Re: Clean handling of SQLite choice when running ./Build test Scott Cain
[Bioperl-l] GD version required/Align::Graphics (was: Re: Clean handling of SQLite choice when running ./Build test Scott Cain
[Bioperl-l] AlignIO Daniel Campo
[Bioperl-l] Parsing BLAST -m 9 reports Lorenzo Carretero
[Bioperl-l] Sorting BLAST hits by score Lorenzo Carretero
[Bioperl-l] Sorting BLAST hits by score Lorenzo Carretero
[Bioperl-l] Bioinformatics Open Source Conference (BOSC 2011)--Abstracts due April 18th! Brad Chapman
[Bioperl-l] FW: Pal2Nal problem Roy Chaudhuri
[Bioperl-l] Bio::Tools::Run::RepeatMasker issues Roy Chaudhuri
[Bioperl-l] not recognizing hsp in a hit Steve Chervitz
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Steve Chervitz
[Bioperl-l] Pull Codon/Amino Acid Change from Genome Reference Data Chris_Moy
[Bioperl-l] Use of uninitialized value in length at Bio/DB/SeqFeature/Store/DBI/mysql.pm line 1062 Peter Cock
[Bioperl-l] Convert fastq to fasta Cook, Malcolm
[Bioperl-l] provide examples of good and bad ML questions for a candidate 'Ten Simple Rules' article Giovanni Marco Dall'Olio
[Bioperl-l] Adding mouseover functionality to bioperl graphics images Sean Davis
[Bioperl-l] Failure when parsing a massive Entrez (GenBank) query. Guillermo Fernández
[Bioperl-l] StandAloneBlastPlus Question Chris Fields
[Bioperl-l] Failure when parsing a massive Entrez (GenBank) query. Chris Fields
[Bioperl-l] Bio::DB::Fasta bug Chris Fields
[Bioperl-l] How to install Bio::Tools::HMM ? Chris Fields
[Bioperl-l] Bio::DB::Fasta bug Chris Fields
[Bioperl-l] Summer of Code Proposal Chris Fields
[Bioperl-l] Sorting BLAST hits by score Chris Fields
[Bioperl-l] Who is going to BOSC 2011 / Codefest 2011 ? Chris Fields
[Bioperl-l] Bio::DB::GFF/Postgres test failures Chris Fields
[Bioperl-l] Bio::DB::GFF/Postgres test failures Chris Fields
[Bioperl-l] bioperl vs other bio* Chris Fields
[Bioperl-l] Bio::DB::GFF/Postgres test failures Chris Fields
[Bioperl-l] [Announcement] Next BioPerl release Chris Fields
[Bioperl-l] Bio::DB::GFF/Postgres test failures Chris Fields
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Chris Fields
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Chris Fields
[Bioperl-l] SeqIO STDOUT changed? Chris Fields
[Bioperl-l] Clean handling of SQLite choice when running ./Build test Chris Fields
[Bioperl-l] Clean handling of SQLite choice when running ./Build test Chris Fields
[Bioperl-l] Clean handling of SQLite choice when running ./Build test Chris Fields
[Bioperl-l] Clean handling of SQLite choice when running ./Build test Chris Fields
[Bioperl-l] GD version required/Align::Graphics (was: Re: Clean handling of SQLite choice when running ./Build test Chris Fields
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Chris Fields
[Bioperl-l] Fwd: Q: batched extraction of sub-sequences and their reverse-complements ? Chris Fields
[Bioperl-l] Bioperl installation doubt Chris Fields
[Bioperl-l] [ANNOUNCEMENT] BioPerl-DB, Run, Network 1.6.900 released Chris Fields
[Bioperl-l] ESummary document Chris Fields
[Bioperl-l] GSoC/BioPerl Reorganization Project Chris Fields
[Bioperl-l] GSoC/BioPerl Reorganization Project Chris Fields
[Bioperl-l] GSoC/BioPerl Reorganization Project Chris Fields
[Bioperl-l] AlignIO Chris Fields
[Bioperl-l] installation problem with Bio::Tools::Run::StandAloneBlastPlus module Chris Fields
[Bioperl-l] Clustalw problems!!! Chris Fields
[Bioperl-l] Bio::Tools::Run::RepeatMasker issues Graham Hamilton
[Bioperl-l] [BioPerl]RepeatMasker issues Graham Hamilton
[Bioperl-l] Bug in a simple bioperl graphics program Richard Harrison
[Bioperl-l] Summer of Code Proposal Fei Hu
[Bioperl-l] Summer of Code Proposal Fei Hu
[Bioperl-l] Summer of Code Proposal Fei Hu
[Bioperl-l] bioperl vs other bio* Yifei Huang
[Bioperl-l] How to remove rRNAs from libraries Juan Jovel
[Bioperl-l] Retaining seqnos from clustal output in AlignIO Lee Katz
[Bioperl-l] Bio::Biblio::MedlineArticle.pm Tom Keller
[Bioperl-l] Who is going to BOSC 2011 / Codefest 2011 ? Hilmar Lapp
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Hilmar Lapp
[Bioperl-l] git help Jonathan "Duke" Leto
[Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included Joel Martin
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Chirag Matkar
[Bioperl-l] Metadata file problems installing BioPerl Mehmet
[Bioperl-l] StandAloneBlastPlus Question Dave Messina
[Bioperl-l] git help Dave Messina
[Bioperl-l] not recognizing hsp in a hit Dave Messina
[Bioperl-l] Summer of Code Proposal Dave Messina
[Bioperl-l] not recognizing hsp in a hit Dave Messina
[Bioperl-l] not recognizing hsp in a hit Dave Messina
[Bioperl-l] Sorting BLAST hits by score Dave Messina
[Bioperl-l] blast results: how to get forward/reverse strand info? Dave Messina
[Bioperl-l] Q: batched extraction of sub-sequences and their reverse-complements ? Dave Messina
[Bioperl-l] Fwd: blast results: how to get forward/reverse strand info? Dave Messina
[Bioperl-l] Fwd: Q: batched extraction of sub-sequences and their reverse-complements ? Dave Messina
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Dave Messina
[Bioperl-l] Retaining seqnos from clustal output in AlignIO Dave Messina
[Bioperl-l] nucleotide sequences from peptide id Dave Messina
[Bioperl-l] Standalone blast Dave Messina
[Bioperl-l] GSoC/BioPerl Reorganization Project Dave Messina
[Bioperl-l] GSoC/BioPerl Reorganization Project Dave Messina
[Bioperl-l] Bioperl installation doubt Brian Osborne
[Bioperl-l] bioperl vs other bio* Miguel Pignatelli
[Bioperl-l] From Blast hits to Taxanomy lineage for Short DNA Sequences (reads) Abhishek Pratap
[Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included Abhishek Pratap
[Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included Abhishek Pratap
[Bioperl-l] From Blast hits to Taxanomy lineage for Short DNA Sequences (reads) Abhishek Pratap
[Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included Abhishek Pratap
[Bioperl-l] Handling hierarchical phylogeny based data in bio-/perl Abhishek Pratap
[Bioperl-l] Bug? Phyml parameters Adam Retchless
[Bioperl-l] ESummary document Luis-Miguel Rodríguez Rojas
[Bioperl-l] ESummary document Luis-Miguel Rodríguez Rojas
[Bioperl-l] Output of a BLAST parse to text file Frank Schwach
[Bioperl-l] GSoC/BioPerl Reorganization Project Sheena Scroggins
[Bioperl-l] GSoC/BioPerl Reorganization Project Sheena Scroggins
[Bioperl-l] Who is going to BOSC 2011 / Codefest 2011 ? Torsten Seemann
[Bioperl-l] Leave-one-out cross-correlation Chet Seligman
[Bioperl-l] Genbank to GFF conversion Rachita Sharma
[Bioperl-l] Genbank to GFF conversion Jason Stajich
[Bioperl-l] SeqIO STDOUT changed? Jason Stajich
[Bioperl-l] Bug? Phyml parameters Jason Stajich
[Bioperl-l] SeqIO STDOUT changed? Jason Stajich
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Jason Stajich
[Bioperl-l] [BioPerl]RepeatMasker issues Jason Stajich
[Bioperl-l] type=MyISAM Lincoln Stein
[Bioperl-l] type=MyISAM & regression in Bio::DB::GFF Lincoln Stein
[Bioperl-l] Bio::DB::GFF/Postgres test failures Lincoln Stein
[Bioperl-l] Bio::DB::GFF/Postgres test failures Lincoln Stein
[Bioperl-l] Bio::DB::GFF/Postgres test failures Lincoln Stein
[Bioperl-l] [Announcement] Next BioPerl release Lincoln Stein
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Lincoln Stein
[Bioperl-l] Bio::DB::GFF/Postgres test failures Lincoln Stein
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Lincoln Stein
[Bioperl-l] Bio::DB::GFF table creation problems/test failures Lincoln Stein
[Bioperl-l] Bug in a simple bioperl graphics program Lincoln Stein
[Bioperl-l] Clean handling of SQLite choice when running ./Build test Lincoln Stein
[Bioperl-l] GD version required/Align::Graphics (was: Re: Clean handling of SQLite choice when running ./Build test Lincoln Stein
[Bioperl-l] Adding mouseover functionality to bioperl graphics images Stephens, Robert (NIH/NCI) [C]
[Bioperl-l] FW: Pal2Nal problem Sun, Xinli
[Bioperl-l] PAML::Codeml SunXinli
[Bioperl-l] Output of a BLAST parse to text file T.Hori
[Bioperl-l] installation error Tim
[Bioperl-l] 454 raw Quality Andrei Tudor
[Bioperl-l] 454 raw Quality Andrei Tudor
[Bioperl-l] 454 raw Quality Joshua Udall
[Bioperl-l] [ANNOUNCEMENT] BioPerl 1.6.9 released Diego M. Vadell
[Bioperl-l] bioperl vs other bio* Albert Vilella
[Bioperl-l] installation error Mike Williams
[Bioperl-l] Some questions about the Bio::PopGen Qian Zhao
[Bioperl-l] Convert fastq to fasta Tao Zhu
[Bioperl-l] bootstrap replicates lberna at adinet.com.uy
[Bioperl-l] blast results: how to get forward/reverse strand info? fpf at biochem.mpg.de
[Bioperl-l] Clustalw problems!!! duxroq
[Bioperl-l] Q: batched extraction of sub-sequences and their reverse-complements ? wadim kapulkin
[Bioperl-l] not recognizing hsp in a hit pageski
[Bioperl-l] not recognizing hsp in a hit pageski
[Bioperl-l] Convert fastq to fasta perlbio007
[Bioperl-l] nucleotide sequences from peptide id shalabh sharma
[Bioperl-l] [Quick help needed] Getting Organism info using NCBI Accession numbers : sample code included shalabh sharma
[Bioperl-l] How to install Bio::Tools::HMM ? sydghyyh14
[Bioperl-l] Accessing nucleotide sequence subarna thakur
[Bioperl-l] Problem with ka/ks ratio subarna thakur
[Bioperl-l] Problem with paml+codeml subarna thakur
[Bioperl-l] installation problem with Bio::Tools::Run::StandAloneBlastPlus module heyi xiao
[Bioperl-l] installation problem with Bio::Tools::Run::StandAloneBlastPlus module heyi xiao

Last message date: Sat Apr 30 19:19:55 EDT 2011
Archived on: Sun May 1 19:16:47 EDT 2011

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