[Bioperl-l] [Bioperl-guts-l] BioPerl on GitHub will not install

Chris Fields cjfields at illinois.edu
Thu Aug 4 13:42:48 EDT 2011


Yes, I can replicate that.  It's from the recent renaming for scripts.  I'll look into it.

chris

On Aug 4, 2011, at 12:39 PM, Razi Khaja wrote:

> All,
> 
> I just checked out the latest development version of BioPerl from GitHub and
> found that it does not install because bp_das_server.pl is missing.
> 
> Building BioPerl
> 'blib/script/bp_das_server.pl' and 'blib/script/bp_das_server.pl' are
> identical (not copied) at /opt/bioperl-live/Bio/Root/Build.pm line 219
> Use of uninitialized value in utime at /usr/lib/perl5/5.8.8/File/Copy.pm
> line 218.
> Use of uninitialized value in utime at /usr/lib/perl5/5.8.8/File/Copy.pm
> line 218.
> Can't rename 'blib/script/bp_das_server.pl' to 'blib/script/bp_das_server.pl':
> No such file or directory at /opt/bioperl-live/Bio/Root/Build.pm line 219.
> 
> After copying the bp_das_server.pl  that I had from a previous installation
> to 'blib/script', I was able to ./Build test and ./Build install the
> development version I checked out.
> 
> Could someone test out this problem and fix it on github? if it really is a
> problem?
> 
> Thanks,
> 
> Razi
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