[Bioperl-l] [Bioperl-guts-l] BioPerl on GitHub will not install

Chris Fields cjfields at illinois.edu
Thu Aug 4 18:11:29 EDT 2011


Now fixed on github.  There was some cruft left in Bio::Root::Build that didn't deal with the recent script renaming.

chris

On Aug 4, 2011, at 12:42 PM, Chris Fields wrote:

> Yes, I can replicate that.  It's from the recent renaming for scripts.  I'll look into it.
> 
> chris
> 
> On Aug 4, 2011, at 12:39 PM, Razi Khaja wrote:
> 
>> All,
>> 
>> I just checked out the latest development version of BioPerl from GitHub and
>> found that it does not install because bp_das_server.pl is missing.
>> 
>> Building BioPerl
>> 'blib/script/bp_das_server.pl' and 'blib/script/bp_das_server.pl' are
>> identical (not copied) at /opt/bioperl-live/Bio/Root/Build.pm line 219
>> Use of uninitialized value in utime at /usr/lib/perl5/5.8.8/File/Copy.pm
>> line 218.
>> Use of uninitialized value in utime at /usr/lib/perl5/5.8.8/File/Copy.pm
>> line 218.
>> Can't rename 'blib/script/bp_das_server.pl' to 'blib/script/bp_das_server.pl':
>> No such file or directory at /opt/bioperl-live/Bio/Root/Build.pm line 219.
>> 
>> After copying the bp_das_server.pl  that I had from a previous installation
>> to 'blib/script', I was able to ./Build test and ./Build install the
>> development version I checked out.
>> 
>> Could someone test out this problem and fix it on github? if it really is a
>> problem?
>> 
>> Thanks,
>> 
>> Razi
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>> Bioperl-guts-l at lists.open-bio.org
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> 
> 
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