[Bioperl-l] pls help..

Scott Cain scott at scottcain.net
Fri Aug 19 09:45:47 EDT 2011


Ravi,

The gff file is fairly useless from a debugging perspective. Can you  
please attach the genbank file you're using?  Also, please indicate  
what version of bioperl you're using.

Scott


Sent from my iPhone

On Aug 19, 2011, at 1:16 AM, Ravi Devani <ravi.devani89 at gmail.com>  
wrote:

> ---------- Forwarded message ----------
> From: Ravi Devani <ravi.devani89 at gmail.com>
> Date: Thu, Aug 18, 2011 at 12:40 PM
> Subject: pls help..
> To: scott at scottcain.net
>
>
> i tried to create a gff3 file from .gbk file using  
> bp_genbank2gff3.pl but
> what i get is same features repeating many times.. and the file keeps
> growing in size ntil my harddisk gets full.. i have tried to filter  
> all
> other features except "region" but still it repeats a single entry  
> many
> times..  i have attached a part of the file generated.. pls kindly  
> help me.
> <ref_chrUn.gff>
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