[Bioperl-l] Installation on OS X Lion

Miguel A Amat miquel.amat at me.com
Tue Aug 23 23:25:31 EDT 2011


Thanks for the feedback, Chris. Now I just need to get GD to install ...

On Aug 23, 2011, at 8:14 PM, Chris Fields <cjfields at illinois.edu> wrote:

> Try installing the latest version from CPAN; this bypasses the Bio::ASN1::EntrezGene req.  DBD::mysql is only needed if you intend on using modules requiring that functionality.
> 
> chris
> 
> On Aug 23, 2011, at 3:11 PM, Miguel A. Amat wrote:
> 
>> I am trying to install bioperl on mac os x 10.7 but ran into problems with the dependency packages Bio::ASN1::EntrezGene and DBD::mysql.
>> 
>> I am running the latest version of CPAN and perl -v 5.12.3 and the BioPerl-1.6.1 package.  The installation was being conducted interactively through via the "perl Build.PL" command.   
>> 
>> Can you provide some help, or suggest an alternative way of installing BioPerl?
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 


More information about the Bioperl-l mailing list