[Bioperl-l] Installation on OS X Lion

Scott Cain scott at scottcain.net
Wed Aug 24 10:31:44 EDT 2011


Hi Miguel,

Did you try the installer for snow leopard on sourceforge:

   http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/libgd-MacOSX/

I don't know if it will work on lion but I don't have a copy of lion  
yet to try it out on.

Scott


Sent from my iPhone

On Aug 23, 2011, at 11:25 PM, Miguel A Amat <miquel.amat at me.com> wrote:

> Thanks for the feedback, Chris. Now I just need to get GD to  
> install ...
>
> On Aug 23, 2011, at 8:14 PM, Chris Fields <cjfields at illinois.edu>  
> wrote:
>
>> Try installing the latest version from CPAN; this bypasses the  
>> Bio::ASN1::EntrezGene req.  DBD::mysql is only needed if you intend  
>> on using modules requiring that functionality.
>>
>> chris
>>
>> On Aug 23, 2011, at 3:11 PM, Miguel A. Amat wrote:
>>
>>> I am trying to install bioperl on mac os x 10.7 but ran into  
>>> problems with the dependency packages Bio::ASN1::EntrezGene and  
>>> DBD::mysql.
>>>
>>> I am running the latest version of CPAN and perl -v 5.12.3 and the  
>>> BioPerl-1.6.1 package.  The installation was being conducted  
>>> interactively through via the "perl Build.PL" command.
>>>
>>> Can you provide some help, or suggest an alternative way of  
>>> installing BioPerl?
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
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