[Bioperl-l] Installation on OS X Lion
Miguel A. Amat
miquel.amat at me.com
Wed Aug 24 13:48:06 EDT 2011
Thanks for all the help; I finally got it to work. Here are the steps I took:
upgraded CPAN and used latest version of BioPerl
installed dependencies in interactive mode, but GD failed.
Quit the installation and tried “install GD-SVG”; this one seems to have less functionality than GD, but it worked.
Then, installed Bio::ASN1::EntrezGene
On Aug 24, 2011, at 10:31 AM, Scott Cain wrote:
> Hi Miguel,
> Did you try the installer for snow leopard on sourceforge:
> I don't know if it will work on lion but I don't have a copy of lion yet to try it out on.
> Sent from my iPhone
> On Aug 23, 2011, at 11:25 PM, Miguel A Amat <miquel.amat at me.com> wrote:
>> Thanks for the feedback, Chris. Now I just need to get GD to install ...
>> On Aug 23, 2011, at 8:14 PM, Chris Fields <cjfields at illinois.edu> wrote:
>>> Try installing the latest version from CPAN; this bypasses the Bio::ASN1::EntrezGene req. DBD::mysql is only needed if you intend on using modules requiring that functionality.
>>> On Aug 23, 2011, at 3:11 PM, Miguel A. Amat wrote:
>>>> I am trying to install bioperl on mac os x 10.7 but ran into problems with the dependency packages Bio::ASN1::EntrezGene and DBD::mysql.
>>>> I am running the latest version of CPAN and perl -v 5.12.3 and the BioPerl-1.6.1 package. The installation was being conducted interactively through via the "perl Build.PL" command.
>>>> Can you provide some help, or suggest an alternative way of installing BioPerl?
>>>> Bioperl-l mailing list
>>>> Bioperl-l at lists.open-bio.org
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
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