[Bioperl-l] Bioperl query....

shalabh sharma shalabh.sharma7 at gmail.com
Tue Aug 30 11:26:00 EDT 2011


Hi Manju,
                 Just follow the link sent by Roy. It also contain some
useful example scripts.
What i am suggesting is , you should run a blast on a very small data set
that you can inspect easily and manually.
Then parse it using SeachIO (follow the link) and you will get a fair idea
that how it works.

-Shalabh



On Tue, Aug 30, 2011 at 7:25 AM, Roy Chaudhuri <roy.chaudhuri at gmail.com>wrote:

> Hi Manju,
>
> See:
> http://www.bioperl.org/wiki/**HOWTO:SearchIO<http://www.bioperl.org/wiki/HOWTO:SearchIO>
>
> Cheers,
> Roy.
>
>
> On 30/08/2011 12:22, Manju Rawat wrote:
>
>> Hey Pls help me..
>> I am very new in Bioperl..
>> And i want to use blast report in my programming..
>> But i dnt know how to use it...pls tell me how to use HSP,gaps.etc
>> methods??/
>> how to use them to extract valus from blast file..
>>
>> Thanks
>> Manju Rawat
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>>
>
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>



-- 
Shalabh Sharma
Scientific Computing Professional Associate (Bioinformatics Specialist)
Department of Marine Sciences
University of Georgia
Athens, GA 30602-3636


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