July 2011 Archives by thread

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Starting: Fri Jul 1 09:34:54 EDT 2011
Ending: Fri Jul 29 17:35:01 EDT 2011
Messages: 174

• [Bioperl-l] Bioperl script execution   Suhaib Mohammed
  • [Bioperl-l] Bioperl script execution   Carnë Draug
    • [Bioperl-l] Bioperl script execution   Carnë Draug
• [Bioperl-l] New perl CUDA bindings   Christopher Fields
  • [Bioperl-l] New perl CUDA bindings   Smithies, Russell
• [Bioperl-l] How (from where) to retrieve FieldInfo objects?   Carnë Draug
  • [Bioperl-l] How (from where) to retrieve FieldInfo objects?   Chris Fields
• [Bioperl-l] scores in Bio::DB::BigBed   Daniel Lang
  • [Bioperl-l] [Gmod-gbrowse] scores in Bio::DB::BigBed   Timothy Parnell
    • [Bioperl-l] [Gmod-gbrowse] scores in Bio::DB::BigBed   Daniel Lang
  • [Bioperl-l] [Gmod-gbrowse] scores in Bio::DB::BigBed   Lincoln Stein
    • [Bioperl-l] [Gmod-gbrowse] scores in Bio::DB::BigBed   Lincoln Stein
      • [Bioperl-l] [Gmod-gbrowse] scores in Bio::DB::BigBed   Chris Fields
      • [Bioperl-l] [Gmod-gbrowse] scores in Bio::DB::BigBed   Daniel Lang
• [Bioperl-l] parsing entrezgene file (lost data)   Carnë Draug
  • [Bioperl-l] parsing entrezgene file (lost data)   Chris Fields
  • [Bioperl-l] parsing entrezgene file (lost data)   Smithies, Russell
    • [Bioperl-l] parsing entrezgene file (lost data)   Carnë Draug
      • [Bioperl-l] parsing entrezgene file (lost data)   Chris Fields
      • [Bioperl-l] parsing entrezgene file (lost data)   Smithies, Russell
      • [Bioperl-l] parsing entrezgene file (lost data)   Carnë Draug
      • [Bioperl-l] parsing entrezgene file (lost data)   Chris Fields
• [Bioperl-l] questions on analysising clustalw alignment result files   Tao Zhu
  • [Bioperl-l] questions on analysising clustalw alignment result files   Peter Cock
    • [Bioperl-l] questions on analysising clustalw alignment result files   Chris Fields
      • [Bioperl-l] questions on analysising clustalw alignment result files   Peter Cock
      • [Bioperl-l] questions on analysising clustalw alignment result files   Tao Zhu
      • [Bioperl-l] questions on analysising clustalw alignment result files   Peter Cock
• [Bioperl-l] Course application deadline: CSHL Computational and Comparative Genomics   William Pearson
• [Bioperl-l] limit the number of blast output per query   Ross KK Leung
  • [Bioperl-l] limit the number of blast output per query   Hans-Rudolf Hotz
    • [Bioperl-l] limit the number of blast output per query   Frank Schwach
      • [Bioperl-l] limit the number of blast output per query   Ross KK Leung
      • [Bioperl-l] limit the number of blast output per query   Frank Schwach
  • [Bioperl-l] limit the number of blast output per query   Peter Cock
• [Bioperl-l] Bio::DB::Taxonomy root not present   Bernd Web
  • [Bioperl-l] Bio::DB::Taxonomy root not present   Brian Osborne
    • [Bioperl-l] Bio::DB::Taxonomy root not present   Jason Stajich
      • [Bioperl-l] Bio::DB::Taxonomy root not present   Chris Fields
    • [Bioperl-l] Bio::DB::Taxonomy root not present   Chris Fields
    • [Bioperl-l] Bio::DB::Taxonomy root not present   Chris Fields
      • [Bioperl-l] Bio::DB::Taxonomy root not present   Brian Osborne
      • [Bioperl-l] Bio::DB::Taxonomy root not present   Hilmar Lapp
      • [Bioperl-l] Bio::DB::Taxonomy root not present   Brian Osborne
• [Bioperl-l] Message:2 limit the number of blast output per query   Tom Keller
• [Bioperl-l] Invitation to connect on LinkedIn   Michael Seewald via LinkedIn
• [Bioperl-l] Bio::DB::Taxonomy root not present   Chris Fields
  • [Bioperl-l] Bio::DB::Taxonomy root not present   Brian Osborne
  • [Bioperl-l] Bio::DB::Taxonomy root not present   Bernd Web
• [Bioperl-l] position method in Bio::Restriction::Analysis   Mark Nadel
  • [Bioperl-l] position method in Bio::Restriction::Analysis   Kevin Brown
• [Bioperl-l] Bio::DB::Taxonomy root not present   Hilmar Lapp
  • [Bioperl-l] Bio::DB::Taxonomy root not present   Chris Fields
  • [Bioperl-l] Bio::DB::Taxonomy root not present   Brian Osborne
• [Bioperl-l] [Gmod-gbrowse] scores in Bio::DB::BigBed   Daniel Lang
• [Bioperl-l] position method in Bio::Restriction::Analysis   Kevin Brown
  • [Bioperl-l] position method in Bio::Restriction::Analysis   Chris Fields
• [Bioperl-l] please help: bp_genbank2gff3.pl problems   Ravi Devani
• [Bioperl-l] Fastq - is it flush, or not?   Nestor Zaburannyi
  • [Bioperl-l] Fastq - is it flush, or not?   Chris Fields
    • [Bioperl-l] Fastq - is it flush, or not?   Nestor Zaburannyi
      • [Bioperl-l] Fastq - is it flush, or not?   Joel Martin
• [Bioperl-l] Bioperl reorganization update   Sheena Scroggins
• [Bioperl-l] Bio::Index::Fastq indexing options   Evan Staton
  • [Bioperl-l] Bio::Index::Fastq indexing options   Chris Fields
    • [Bioperl-l] Bio::Index::Fastq indexing options   Chris Fields
      • [Bioperl-l] Bio::Index::Fastq indexing options   Peter Cock
      • [Bioperl-l] Bio::Index::Fastq indexing options   Chris Fields
      • [Bioperl-l] Bio::Index::Fastq indexing options   Peter Cock
• [Bioperl-l] Getting started with bioperl-db   Lutz Gehlen
  • [Bioperl-l] Getting started with bioperl-db   Chris Fields
    • [Bioperl-l] Getting started with bioperl-db   Lutz Gehlen
      • [Bioperl-l] Getting started with bioperl-db   Hilmar Lapp
• [Bioperl-l] Bio::Index::Fastq indexing options   Evan Staton
• [Bioperl-l] how to find SeqFeature at specific sequence location   Adam Witney
  • [Bioperl-l] how to find SeqFeature at specific sequence location   Smithies, Russell
    • [Bioperl-l] how to find SeqFeature at specific sequence location   Chris UI
      • [Bioperl-l] how to find SeqFeature at specific sequence location   Adam Witney
      • [Bioperl-l] how to find SeqFeature at specific sequence location   Roy Chaudhuri
      • [Bioperl-l] how to find SeqFeature at specific sequence location   Adam Witney
• [Bioperl-l] Bioperl 1.6.1 problem   Galbáts Borisz
  • [Bioperl-l] Bioperl 1.6.1 problem   Chris Fields
• [Bioperl-l] can't retrieve description using Bio::DB::EntrezGene   jmi k
  • [Bioperl-l] can't retrieve description using Bio::DB::EntrezGene   Carnë Draug
• [Bioperl-l] Fwd: URGENT! Update of Bio::DB::SwissProt   Jason Stajich
• [Bioperl-l] help with Bio::SearchIO::hmmer bug   George Hartzell
• [Bioperl-l] fwding question blast vs blast+   Albert Vilella
  • [Bioperl-l] fwding question blast vs blast+   Chris Fields
  • [Bioperl-l] fwding question blast vs blast+   Smithies, Russell
• [Bioperl-l] can't retrieve description using Bio::DB::EntrezGene   jmi k
• [Bioperl-l] Bug or special design of the 'length' method for Bio::Seq ?   Tao Zhu
  • [Bioperl-l] Bug or special design of the 'length' method for Bio::Seq ?   Peter Cock
    • [Bioperl-l] Bug or special design of the 'length' method for Bio::Seq ?   Chris Fields
• [Bioperl-l] Fastq quality values as strings   Nestor Zaburannyi
  • [Bioperl-l] Fastq quality values as strings   Chris Fields
• [Bioperl-l] can't retrieve description using Bio::DB::EntrezGene   Carnë Draug
• [Bioperl-l] new bioperl script   Carnë Draug
  • [Bioperl-l] new bioperl script   Jun Yin
• [Bioperl-l] new bioperl script   Carnë Draug
• [Bioperl-l] newby Q: fetch sequence from one database and blast against another and retrieve coordinates   Tiffanie Moss
• [Bioperl-l] Error message installing BioPerl on Windows x86 with ActivePerl 5.12.4   Vicky Hollenbeck
  • [Bioperl-l] Error message installing BioPerl on Windows x86 with ActivePerl 5.12.4   Scott Cain
    • [Bioperl-l] Error message installing BioPerl on Windows x86 with ActivePerl 5.12.4   Chris Fields
    • [Bioperl-l] Error message installing BioPerl on Windows x86 with ActivePerl 5.12.4   Vicky Hollenbeck
      • [Bioperl-l] Error message installing BioPerl on Windows x86 with ActivePerl 5.12.4   Chris Fields
      • [Bioperl-l] Error message installing BioPerl on Windows x86 with ActivePerl 5.12.4   Vicky Hollenbeck
• [Bioperl-l] perl or bioperl script to calculate Kimura 2-parameter (K2P) distance of two dna sequences   Li Liu
  • [Bioperl-l] perl or bioperl script to calculate Kimura 2-parameter (K2P) distance of two dna sequences   Chris Fields
• [Bioperl-l] Bio::Index:SwissPfam file loading problem   Eden Dr
  • [Bioperl-l] Bio::Index:SwissPfam file loading problem   Jason Stajich
• [Bioperl-l] hmmer3.pm question re query and hit coordinates   Thomas Sharpton
  • [Bioperl-l] hmmer3.pm question re query and hit coordinates   Chris Fields
    • [Bioperl-l] hmmer3.pm question re query and hit coordinates   Givan, Scott A.
• [Bioperl-l] Bio::DB::SwissProt   Jason Stajich
  • [Bioperl-l] Bio::DB::SwissProt   Chris Fields
• [Bioperl-l] Bio::DB::SwissProt   Jason Stajich
• [Bioperl-l] Perl   Akash
  • [Bioperl-l] Perl   Luis-Miguel Rodríguez Rojas
  • [Bioperl-l] Perl   Carnë Draug
  • [Bioperl-l] Perl   Adam Witney
• [Bioperl-l] BLAT psl file to GTF   Amin Momin
  • [Bioperl-l] BLAT psl file to GTF   Chris Fields
    • [Bioperl-l] BLAT psl file to GTF   Jamie Estill
• [Bioperl-l] changing script filenames   Carnë Draug
  • [Bioperl-l] changing script filenames   Chris Fields
• [Bioperl-l] BLAT psl file to GTF   Amin Momin
  • [Bioperl-l] BLAT psl file to GTF   Jamie Estill
• [Bioperl-l] error in Protparm module   Shachi Gahoi
  • [Bioperl-l] Where to find S. cerevisiae tRNA and mRNA sequences?   Juan Jovel
    • [Bioperl-l] Where to find S. cerevisiae tRNA and mRNA sequences?   Chris Fields
      • [Bioperl-l] Where to find S. cerevisiae tRNA and mRNA sequences?   Lakshmi Kastury-Vennelaganti
• [Bioperl-l] How is is_circular recorded in BioSQL (by BioPerl)?   Peter Cock
  • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Roy Chaudhuri
    • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Peter Cock
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Roy Chaudhuri
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Peter Cock
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Roy Chaudhuri
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Peter Cock
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Roy Chaudhuri
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Peter Cock
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Roy Chaudhuri
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Peter Cock
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Chris Fields
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Chris Fields
      • [Bioperl-l] [BioSQL-l] How is is_circular recorded in BioSQL (by BioPerl)?   Chris Fields
• [Bioperl-l] BioPerl Installation   seo biologi
• [Bioperl-l] problem in using protparam.pm module   Shachi Gahoi
  • [Bioperl-l] problem in using protparam.pm module   Shachi Gahoi
    • [Bioperl-l] problem in using protparam.pm module   Chris Fields
      • [Bioperl-l] problem in using protparam.pm module   Shachi Gahoi
• [Bioperl-l] github -- pull request for adding bp_ to scripts   Carnë Draug
  • [Bioperl-l] github -- pull request for adding bp_ to scripts   Chris Fields
    • [Bioperl-l] github -- pull request for adding bp_ to scripts   Carnë Draug
      • [Bioperl-l] github -- pull request for adding bp_ to scripts   Chris Fields
      • [Bioperl-l] github -- pull request for adding bp_ to scripts   Carnë Draug
      • [Bioperl-l] github -- pull request for adding bp_ to scripts   Chris Fields
• [Bioperl-l] Perl   Adam Witney
• [Bioperl-l] Fwd: perl   Carnë Draug
  • [Bioperl-l] Fwd: perl   Frank Schwach
• [Bioperl-l] Bio::Tools::Run::Phylo::Phyml, tree_string   Tristan Lefebure
  • [Bioperl-l] Bio::Tools::Run::Phylo::Phyml, tree_string   Tristan Lefebure
    • [Bioperl-l] Bio::Tools::Run::Phylo::Phyml, tree_string   Chris Fields
      • [Bioperl-l] Bio::Tools::Run::Phylo::Phyml, tree_string   Tristan Lefebure
• [Bioperl-l] Error writing SequenceProcessor to associate GO terms in biosql database   Adam Witney
• [Bioperl-l] Fwd: [blast-announce] New SOAP based BLAST service   Chris Fields
• [Bioperl-l] Bug in Bio::SeqIO::fastq - seq length of 1 with quality of 0 (zero)   Nath
  • [Bioperl-l] Bug in Bio::SeqIO::fastq - seq length of 1 with quality of 0 (zero)   Chris Fields
  • [Bioperl-l] Bug in Bio::SeqIO::fastq - seq length of 1 with quality of 0 (zero)   Chris Fields
• [Bioperl-l] Perl   Adam Witney
  • [Bioperl-l] Perl   Frank Schwach
    • [Bioperl-l] Perl   Thomas Juettemann
• [Bioperl-l] Error for Bio::Graphics in the HOWTO script for rendering EMBL features   Joshua Steele
• [Bioperl-l] protaparam   Shachi Gahoi
• [Bioperl-l] Question to Bio::SearchIO::infernal.pm   Nadine Elpida Tatto

Last message date: Fri Jul 29 17:35:01 EDT 2011
Archived on: Wed Aug 3 06:36:21 EDT 2011

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