[Bioperl-l] Mapping GO slim terms

Jason Stajich jason.stajich at gmail.com
Wed Jun 29 01:38:24 EDT 2011


Lorenzo -

you probably want to look at the GO-perl modules from Chris Mungall  and others (http://search.cpan.org/~cmungall/go-perl/) -- these are not part of BioPerl however.

I think this script does something akin to what you are asking.
http://search.cpan.org/~cmungall/go-perl/scripts/map2slim

On Jun 23, 2011, at 11:17 AM, Lorenzo Carretero Paulet wrote:

> Hi all,
> Anyone knows if there is a way of mapping a set fo GO terms to their GO slim terms (providing the corresponding OBO file) using Bioperl?
> Cheers,
> Lorenzo
> 
> 
> -- 
> *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
> Lorenzo Carretero Paulet
> Institute for Plant Molecular and Cell Biology - IBMCP (CSIC-UPV)
> Integrative Systems Biology Group
> C/ Ingeniero Fausto Elio s/n.
> 46022 Valencia, Spain
> 
> Phone:  +34 963879934
> Fax:    +34 963877859
> e-mail: locarpau at upvnet.upv.es
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> 
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