[Bioperl-l] From Blast hits to Taxanomy lineage for Short DNA Sequences (reads)

Abhishek Pratap abhishek.vit at gmail.com
Tue Mar 8 17:42:03 EST 2011

Hi All

I have results from different megablast of short reads(DNA sequences)
and after extracting the tophit for each read I want to bin them by
their lineage creating a tree.

For example.

If blast query hits the reference ->

I want to get the lineage for this specie.


The final goal is to do the above mapping as efficiently as possible.
Any pointers will be appreciated.


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