[Bioperl-l] Local blast hit (hsp_hseq) extracted from fasta file
Ian Mc Dowell
ian.mcdowell at gmail.com
Thu Mar 10 12:13:01 EST 2011
I would like to take local blast hit sequences, i.e. hsp_hseq in blast xml
format, and extract the full sequences of those hits from the original fasta
file and put them in a fasta file of all hits that I can use later.
This should be a widely performed task but I can't find any scripts that
directly address this issue. I have not acquired the skills to make my own
scripts for this task.
Thanks so much if you have anything that can help me out,
University of Rhode Island
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