[Bioperl-l] blast best hit

boyang zhe zheboyang at gmail.com
Thu Mar 31 08:28:53 EDT 2011


Hi,

I just want to parse the blast results ,and get the best hit.

One way is to parse the results as usual, then get the first hit and exit
the loop.

I checked the bioperl document, and find that there is a method
best_hit_only in Bio::SearchIO::blast.pm.
But it only return 1/0. So my question is how to use this method to get the
best hit.

Thank you very much!

Boyang


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