[Bioperl-l] git help

Scott Cain scott at scottcain.net
Thu Mar 31 20:19:33 EDT 2011


I just went a head and:

  git commit -a
  git pull --rebase
  git push

as suggested by rbuels.  That appeared to work.

Scott


On Thu, Mar 31, 2011 at 7:13 PM, Scott Cain <scott at scottcain.net> wrote:
> Hi all,
>
> I just want to know if it is safe for me to commit.  Here is what git
> said to me:
>
> scott-cains-macbook-pro:bioperl-live cain$ git commit
> # On branch master
> # Your branch is behind 'origin/master' by 47 commits, and can be
> fast-forwarded.
> #
> # Changed but not updated:
> #   (use "git add <file>..." to update what will be committed)
> #   (use "git checkout -- <file>..." to discard changes in working directory)
> #
> #       modified:   Bio/DB/GFF.pm
> #       modified:   Bio/FeatureIO/gff.pm
> #       modified:   scripts/Bio-DB-GFF/bulk_load_gff.PLS
> #       modified:   scripts/Bio-DB-GFF/fast_load_gff.PLS
> #       modified:   t/SeqFeature/FeatureIO.t
> #       modified:   t/data/knownGene.gff3
> #
> # Untracked files:
> #   (use "git add <file>..." to include in what will be committed)
> #
> #       scripts/Bio-DB-GFF/genbank2gff3.diff
> no changes added to commit (use "git add" and/or "git commit -a")
> ----------------------
>
> so should I do a git commit -a?
>
> Also, when I try a git pull, this is what it tells me:
>
> scott-cains-macbook-pro:bioperl-live cain$ git pull
> Updating 1c2cf24..d5de022
> error: Your local changes to 'Bio/FeatureIO/gff.pm' would be
> overwritten by merge.  Aborting.
> Please, commit your changes or stash them before you can merge.
>
> Thanks,
> Scott
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research



More information about the Bioperl-l mailing list