[Bioperl-l] Scripting help to identify adaptors count in reads

Giorgio C casaburi at ceinge.unina.it
Fri Nov 11 07:13:50 EST 2011


Hi thank you for your answer !!! 

At the end i tried this script and seems to work for this purpose:


perl -pe
's/.*?((NNNNNNNNNNNNNNN|NNNNNNNNNNNNNNN)(.*?)(NNNNNNNNNNNNNNN|NNNNNNNNNNNNNNN))/$3/g'
Scrivania/orchidea/Fiore/Mydata.fasta > result.txt


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