[Bioperl-l] How to get Remote BLAST results in a single out

Dave Messina David.Messina at sbc.su.se
Mon Nov 14 14:31:18 EST 2011

> Re: a BLAST+ equivalent for blastcl3, I believe there is an option for the various 'blast*' indicating the search is to use a remote database.  I haven't used it, though...

Yes, it's the --remote option. I've used it, and it works great.

The speed is throttled by NCBI, however, so for an appreciable number of queries, the standard advice applies to run the search on your own computers.



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