[Bioperl-l] Galaxy tools?
p.j.a.cock at googlemail.com
Sun Nov 27 20:28:33 EST 2011
On Monday, November 28, 2011, Smithies, Russell wrote:
> Possibly the wrong place to ask but has anyone written
> Galaxy tools using BioPerl?
> I was thinking of creating blast graphic and format converter
> tools as I couldn't see any already available in their toolbox.
> It looks like I can just write a Python wrapper for my existing
> BioPerl scripts - although I suspect the "correct" method is to
> use BioPython methods (but Python annoys me with its lack
> of semi-colons and required white-space)
Galaxy is agnostic about what language the tools are in,
you can use a binary, shell script, Java, Perl, Python etc.
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