[Bioperl-l] Find distances between LCA's and the other nodes from a tree

Ross KK Leung ross at cuhk.edu.hk
Tue Oct 4 20:04:22 EDT 2011


-----Original Message-----
From: rutgeraldo at gmail.com [mailto:rutgeraldo at gmail.com] On Behalf Of Rutger
Vos
Sent: 2011Äê10ÔÂ5ÈÕ 8:00
To: Ross KK Leung
Cc: Thomas Sharpton; bioperl-l
Subject: Re: [Bioperl-l] Find distances between LCA's and the other nodes
from a tree

> I shall infer the state based on descendant's states. In my example, Nodes
H
> and I belong to "Wing", then their ancestor M is also assigned "Wing".
After
> assigning these states to all the nodes of the tree, I shall calculate the
> distances between these nodes.

What is your approach for when internal states are equivocal?

I will assign "undetermined" and the detailed plan of assignment is too much
to mention here.




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