[Bioperl-l] Find distances between LCA's and the other nodes from a tree
Ross KK Leung
ross at cuhk.edu.hk
Tue Oct 4 20:04:22 EDT 2011
From: rutgeraldo at gmail.com [mailto:rutgeraldo at gmail.com] On Behalf Of Rutger
Sent: 2011Äê10ÔÂ5ÈÕ 8:00
To: Ross KK Leung
Cc: Thomas Sharpton; bioperl-l
Subject: Re: [Bioperl-l] Find distances between LCA's and the other nodes
from a tree
> I shall infer the state based on descendant's states. In my example, Nodes
> and I belong to "Wing", then their ancestor M is also assigned "Wing".
> assigning these states to all the nodes of the tree, I shall calculate the
> distances between these nodes.
What is your approach for when internal states are equivocal?
I will assign "undetermined" and the detailed plan of assignment is too much
to mention here.
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