jeanmarc.frigerio at gmail.com
Tue Oct 18 08:43:51 EDT 2011
I agree that it'd be nice to see it revived. I made a patch to the Bio/
Ext/Align/Makefile.PL to make the compiler happy, just by changing:
'MYEXTLIB' => 'libs/libsw$(LIB_EXT)',
'MYEXTLIB' => '\'-fPIC libs/libsw$(LIB_EXT)\'',
Thanks Dave for the topic !
Chris can you correct the file or should I submit the patch (I don't
know where ?)
On 2 sep, 17:20, Jack Tanner <i... at hotmail.com> wrote:
> I also see that someone's forked it on Github and made some packaging fixes.
> It'd be nice to see it revived.
> On 9/2/2011 9:00 AM, Fields, Christopher J wrote:
> > I think, if this is actively being used, we should split it away from bioperl-ext and release it on its own. Otherwise I worry about the long-term support for it/
> > chris
> > On Sep 2, 2011, at 3:44 AM, Dave Messina wrote:
> >> As it happens, a colleague of mine needed Bio::Ext::Alignfor hhrpred:
> >> He got it working thus:
> >> Hi Dave,
> >> thanks a lot. i made it work. The error i got later on was:
> >> relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object;
> >> recompile with -fPIC
> >> the solution is:
> >> perl Makefile.PL PREFIX=<path to installation> /fftwsingle --enable-shared --with-pic --enable-single
> >> <edit Makefile to add -fPIC to CFLAGS>
> >> make
> >> make install
> >> Dave
> >> On Fri, Sep 2, 2011 at 06:31, Fields, Christopher J<cjfie... at illinois.edu> wrote:
> >> Yes, it's essentially deprecated (unmaintained). I don't know of anyone who has packaged that up in a while, if ever.
> >> chris
> >> On Sep 1, 2011, at 10:49 PM, Jack Tanner wrote:
> >>> I'd like to run Bio::Ext::Align, from bioperl-ext. Seems like a pretty quiet codebase these days... Is it dead?
> >>> Does anyone have a spec file for building an SRPM for it for RHEL 6?
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