[Bioperl-l] Downloading refseq genomes in batch

Carnë Draug carandraug+dev at gmail.com
Tue Apr 3 11:53:32 EDT 2012


On 3 April 2012 16:34, shalabh sharma <shalabh.sharma7 at gmail.com> wrote:
> Hi All,
>         I am trying to download refseq genomes in batch. But instead of
> accession number i have genome names (=~ 500).
> Is there any way i can download them using some bioperl module ?

If you have their name/official symbol, then searching on the database
should nly return one hit, therefore one UID. Make the search, get
that number, and use it for download. The EUtilities module should do
that.

Carnë



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