[Bioperl-l] Downloading refseq genomes in batch

shalabh sharma shalabh.sharma7 at gmail.com
Tue Apr 3 14:15:16 EDT 2012


Hi Came,
              Thanks for your reply.
I tried to get UID from genome names but i cant find on EUtilities.
I have taxa id for those genomes, can i download genomes with taxa id in
batch ?

Thanks
Shalabh


On Tue, Apr 3, 2012 at 11:53 AM, Carnë Draug <carandraug+dev at gmail.com>wrote:

> On 3 April 2012 16:34, shalabh sharma <shalabh.sharma7 at gmail.com> wrote:
> > Hi All,
> >         I am trying to download refseq genomes in batch. But instead of
> > accession number i have genome names (=~ 500).
> > Is there any way i can download them using some bioperl module ?
>
> If you have their name/official symbol, then searching on the database
> should nly return one hit, therefore one UID. Make the search, get
> that number, and use it for download. The EUtilities module should do
> that.
>
> Carnë
>



-- 
Shalabh Sharma
Scientific Computing Professional Associate (Bioinformatics Specialist)
Department of Marine Sciences
University of Georgia
Athens, GA 30602-3636



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