[Bioperl-l] Weird efetch problem.

Fields, Christopher J cjfields at illinois.edu
Thu Apr 5 09:07:28 EDT 2012


On Apr 5, 2012, at 5:31 AM, Siddhartha Basu wrote:

> On Wed, 04 Apr 2012, shalabh sharma wrote:
> 
>> Hi All,
>>        I am facing a really weird problem using efetch. I am getting
>> different outputs if i am using different method of passing values.
>> ...
>> 
>> I am getting correct protein sequence but if i am passing values (same id)
>> via an array i am getting nucleotide sequences.
>> 
>> ..
> Could you send the ids here.
> 
> -siddhartha

And please file a bug report on this if something is found.  I do know if you use accession numbers you can sometimes get odd results.  I recommend only using UIDs (the GI in the case of protein and nuc seqs).

chris


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