[Bioperl-l] Question about EUtils esearch

Fields, Christopher J cjfields at illinois.edu
Fri Apr 6 15:09:23 EDT 2012


Shalabh,

You should try getting the specific genome project ID of interest, linking to the proteins, and then grab those.  The EUtilities cookbook has a few examples on how to do that.

chris

On Apr 6, 2012, at 9:52 AM, shalabh sharma wrote:

> Hi All,
>       I am trying to get all the UIDs for few genomes.
> For example:
> for  'Homo sapiens" if i use esearch i get "3277310" UIDs but if i go to
> NCBI genome page i see there are only =~ 32,00 proteins.
> http://www.ncbi.nlm.nih.gov/genome?term=Homo%20sapiens
> 
> I have done this for lot of genomes and i am afraid that i have to do this
> again.
> 
> Thanks
> Shalabh
> 
> 
> -- 
> Shalabh Sharma
> Scientific Computing Professional Associate (Bioinformatics Specialist)
> Department of Marine Sciences
> University of Georgia
> Athens, GA 30602-3636
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