[Bioperl-l] Bio::DB::GenBank new(?) warning

Fields, Christopher J cjfields at illinois.edu
Tue Aug 28 16:02:11 EDT 2012


Is the BioProject DBSOURCE retained if you write the output back using Bio::SeqIO?

chris

On Aug 28, 2012, at 1:09 PM, Jim Hu <jimhu at tamu.edu> wrote:

> I noticed that NCBI recently changed the path to genomes in their web interface. I'm wondering if that's related to my getting this kind of message when I use Bio::DB::GenBank->get_Seq_by_acc()
> 
> --------------------- WARNING ---------------------
> MSG: Unrecognized DBSOURCE data: BioProject: PRJNA161931
> 
> ---------------------------------------------------
> 
> It still seems to work, though.
> 
> Jim
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> Jim Hu
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