[Bioperl-l] parsing swissprot using SeqIO::swiss

Brian Osborne bosborne11 at verizon.net
Thu Feb 9 16:37:17 EST 2012


Amin,

I'm not sure why you want use these methods. You should not have to use them if all you want to do is get features from SwissProt files. Have you taken a look at the HOWTO?

http://www.bioperl.org/wiki/HOWTO:Feature-Annotation

Brian O.



On Feb 9, 2012, at 4:23 PM, Amin Momin wrote:

> 
> Hi
> 
> I am trying to parse the swissprot text files to capture the feature (FT) information. However I cant find any documentation to get the information from the functions _print_swissprot_FTHelper and _read_swissprot_FTHelper that capture the feature table. Can someone give any suggestions.
> 
> Thanks,
> Amin
> 		 	   		  
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