[Bioperl-l] downloading 16s from NCBI

Florent Angly florent.angly at gmail.com
Fri Feb 10 19:26:40 EST 2012

Hi Shalabh,
There are specialized databases that contain only 16S rRNA genes, namely 
GreenGenes, RDP, Silva. You should have a look.

On 11/02/12 04:30, shalabh sharma wrote:
> Hi,
>      Is it possible to download all 16s sequences from NCBI?
> I tried to look at Bio::DB::GenBank, but i am not sure if u can do it for
> all 16s .
> I would really appreciate if anyone can help me out.
> Thanks
> Shalabh

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