[Bioperl-l] downloading 16s from NCBI
thomas.sharpton at gmail.com
Fri Feb 10 19:42:58 EST 2012
Florent is correct about the specialized databases - they are great
To answer your specific question about all 16S sequences in GenBank,
see this webpage, which contains a 16S database download link:
On Feb 10, 2012, at 4:26 PM, Florent Angly wrote:
> Hi Shalabh,
> There are specialized databases that contain only 16S rRNA genes,
> namely GreenGenes, RDP, Silva. You should have a look.
> On 11/02/12 04:30, shalabh sharma wrote:
>> Is it possible to download all 16s sequences from NCBI?
>> I tried to look at Bio::DB::GenBank, but i am not sure if u can do
>> it for
>> all 16s .
>> I would really appreciate if anyone can help me out.
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