[Bioperl-l] Fate of Bio::Tools::PCRSimulation

Florent Angly florent.angly at gmail.com
Sun Feb 26 01:44:06 EST 2012


Hi all,

I am interested in the Bio::Tools::PCRSimulation module. Supposedly it 
was added to Bioperl 0.3 and is also mentionned in the Bio::PrimedSeq 
module. However, I cannot find in the current Bioperl codebase. Any idea 
where it went?

The reason I am asking is because I have some code to do silico PCR 
using regular expressions. I wanted to modularize my code more and make 
it into a module for Bioperl. Of course, if there is something similar 
in Bioperl already, I need to have a look at it. If there is nothing 
similar, what namespace do you suggest to use? 
Bio::Tools::AmpliconExtractor? Bio::Tools::AmpliconSearch? 
Bio::Tools::InSilicoPCR?

Thanks,

Florent


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