[Bioperl-l] fastq splitter

Peter Cock p.j.a.cock at googlemail.com
Wed Feb 29 12:03:03 EST 2012


On Wed, Feb 29, 2012 at 4:56 PM, Sean O'Keeffe <limericksean at gmail.com> wrote:
> But wouldn't that result in a 3 line fastq output line which would screw up
> other programs expecting 4 fastq lines? - e.g. bowtie.

No, I mean the third line is just the plus character and the new line.

Again, I refer you to the example Chris quoted earlier:

http://lists.open-bio.org/pipermail/bioperl-l/2012-February/036271.html

Peter


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