[Bioperl-l] New to bioperl

Roy Chaudhuri roy.chaudhuri at gmail.com
Tue Jan 24 09:11:22 EST 2012


Hi Joel,

This is possible using BioPerl, but it may be simpler to use an online 
automated annotation service eg:
http://www.xbase.ac.uk/annotation

Roy.

On 24/01/2012 13:38, Bradyjoel wrote:
>
> Hi all,
>
> I'm somewhat new to the bioinformatics but I need to annotate a newly
> sequenced bacterial genome based on some known proteins amino acid sequences
> from a neighbouring organism. I've been doing this manually with tblastn and
> then search and annotated this in artemis. However I have an entire
> directory full of these protein sequences and was wondering if this could be
> automated in such way that I have an input nucleotide sequence consisting of
> contigs which are automatically translated in frames and then aligned and
> annotated with the known protein amino acid sequences. If you could help me
> with writing such a script I would be very grateful.
>
> Joel
>
>
>



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