[Bioperl-l] Lineage from GB files

Adlai Burman adlai at refenestration.com
Fri Jan 27 06:27:15 EST 2012


Does anyone know if there is a way to batch extract taxa such as class, order in Perl from, e/g/ genbank, EMBL records? I know that genus/species and some of the higher taxa are easy to parse from gb records but the interior are inconsistent strings (e.g. element x sometimes is a subclass and sometimes a family.
Any help would really be appreciated.

Thanks.
Adlai


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