[Bioperl-l] Running into problems

Scott Cain scott at scottcain.net
Mon Jan 30 14:54:03 EST 2012

Hi Joel,

I don't have blast+ installed, so I can't run your script.  You will
probably get more help if you copy the errors you are getting into
your email.


On Mon, Jan 30, 2012 at 6:21 AM, Bradyjoel <joel.klein at wur.nl> wrote:
> HI all,
> I'm quite new to bioperl and tried to write a script that creates a database
> from a newly sequenced genome and then preforms a tblastn against a multiple
> protein fasta file and then creates a blast report were only the results
> that only preservers identity scores above 98%. However my script keeps
> returning numerous errors and problems and since I have only a little
> experience I cannot determine were I went wrong. I include the code that I
> got so far in the attachment. Hope someone can help.
> Regards Joel
> http://old.nabble.com/file/p33228400/blast1.pl blast1.pl
> --
> View this message in context: http://old.nabble.com/Running-into-problems-tp33228400p33228400.html
> Sent from the Perl - Bioperl-L mailing list archive at Nabble.com.
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

More information about the Bioperl-l mailing list