[Bioperl-l] error during installation

Du, Peng du at ibio.jp
Sun Jun 17 07:16:17 EDT 2012

Sorry for that, actually I am using it, but I forgot to paste the code
in which I invoked "pairwise_alignment" with dpAlign.
At the same time, I met another problem regarding "ClustalW". The
error message was"MSG ClustalW call align crashed -1". It might be
because of incorrect installation of BioPerl-run. But, I didn't
encounter any error message while installing it.

Thank all of you.


On Sun, Jun 17, 2012 at 8:01 PM, Leon Timmermans
<l.m.timmermans at students.uu.nl> wrote:
> On Sun, Jun 17, 2012 at 7:37 AM, Du, Peng <du at ibio.jp> wrote:
>> At present, I want to use dpAlign, I don't know I still need bio-ext
>> to perform dpAlign or I could modify my code to achieve this without
>> bio-ext package.
>> Thank you.
> Bio::Tools::dpAlign is in the main BioPerl distribution, as can be
> seen here: https://metacpan.org/module/Bio::Tools::dpAlign. You will
> need to take out that «use Bio::Ext::Align;», but you don't seem to be
> using it anyway.
> Leon


Peng Du
Graduate School of Information Science and Technology, Hokkaido University
Kita 14 Nishi 9 Kita-ku, Sapporo, Japan  060-0814
Email: du at ibio.jp Tel: +81 80 3268 9713

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