[Bioperl-l] Error occurred during installation
du at ibio.jp
Fri Jun 15 22:47:19 EDT 2012
Hi Bioperl Team,
This is a newbie, I encountered a problem while installing bioperl-ext.
The error message is :
/usr/bin/ld: libs/libsw.a(aln.o): relocation R_X86_64_32 against
`.rodata.str1.8' can not be used when making a shared object;
recompile with -fPIC
libs/libsw.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
I googled some solutions, but all of them are confusing, could you
tell me where exactly should I add the -fPIC? In the makefile under
the bioperl-ext-1.4 directory? I tried to add this to the CCCDLFLAGS,
CCDLFLAGS, LDDLFLAGS and LDFLAGS in that file. But it still doesn't
Could you tell me what to do or where could I find the answer?
Thank you very much.
Graduate School of Information Science and Technology, Hokkaido University
Kita 14 Nishi 9 Kita-ku, Sapporo, Japan 060-0814
Email: du at ibio.jp Tel: +81 80 3268 9713
More information about the Bioperl-l