[Bioperl-l] Rendering multi-exon gene models from genbank input file

Christian Frech frech.christian at gmail.com
Wed Jun 27 01:58:36 EDT 2012


Hi all,

can someone please lay out the proper BioPerl procedure that renders 
Bio::Graphics gene models (displaying UTRs, CDS, and introns) given a 
genbank entry as input? In particular, CDS and mRNA split locations 
specified as joins() in the genbank entry should be resolved correctly as 
exons and introns.

I am aware of embl2picture.pl and Bio::SeqFeature::Tools::Unflattener, but so far both did not give me a completely satisfactory solution to this problem.


Thanks a lot,
Christian


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