[Bioperl-l] New to BioPerl - Gene prediction & fgenesh

Merche Castillo merche at uni-bonn.de
Tue Mar 27 10:29:28 EDT 2012

Hi everyone,

I am working on gene prediction in nematodes and I'm interested in 
learning more about BioPerl and how I can use it to get some nice 
prediction out of my nematode contigs. I have already done some 
predictions with the Fgenesh web version, but it takes a long time since 
I have to submit each contig separately. Thus I'm interesting in writing 
a script that would use the fgenesh module. I have seen the 
documentation is quite old, so I wonder whether the BioPerl module runs 
on the latest version.

Since I would like to do comparative genomics among different nematode 
species I was wondering whether it is possible to find fgenesh+ or 
fgenesh++. Since I am quite new here I would appreciate any advice on 
BioPerl and gene prediction

Thanks in advance

Best Regards

Mercedes Castillo
INRES, Dept. Molecular Phytomedicine
University of Bonn

Karlrobert-Kreiten-str 13
53115 Bonn
merche at uni-bonn.de

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