[Bioperl-l] extract nt positions from Hit

Rondon Neto rondonbio at yahoo.com.br
Thu Oct 4 17:30:37 EDT 2012


Hi there!
I would like to know if there is a way to recover the nucleotides and their positions in the database sequences that are divergent from query, by Search::IO.
What I need are:
- the nucleotides
- their positions in DB sequences
- the positions of mismatches and gaps that they are related.

thank you very much,

Rondon


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