[Bioperl-l] genbank/embl format ebnf or other formal description

Fields, Christopher J cjfields at illinois.edu
Tue Sep 11 21:29:04 EDT 2012


On the subject of context-free grammars and Perl, has anyone looked at Marpa?  The latest version has a C lib that is intended for use outside of Perl.

https://metacpan.org/module/Marpa::R2

(and ragel looks very promising as well)

chris

On Sep 11, 2012, at 6:00 PM, Hilmar Lapp <hlapp at drycafe.net>
 wrote:

> And I should say that the repo is here: https://github.com/lomereiter/sambamba
> 
> 	-hilmar
> 
> On Sep 11, 2012, at 6:41 PM, Hilmar Lapp wrote:
> 
>> 
>> On Sep 11, 2012, at 6:26 PM, Dan Kortschak wrote:
>> 
>>> I'd be interested to see the GSoC project if it's public yet
>> 
>> Of course it is - it's GSoC after all, and an OBF student. You should be able to find links etc on the student's respective posts on his blog: http://lomereiter.wordpress.com
>> 
>> 	-hilmar 
>> -- 
>> ===========================================================
>> : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
>> ===========================================================
>> 
>> 
>> 
>> 
> 
> -- 
> ===========================================================
> : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
> ===========================================================
> 
> 
> 
> 
> 
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