[Bioperl-l] clustalw2

Fields, Christopher J cjfields at illinois.edu
Tue Sep 11 21:31:36 EDT 2012


Can you call /usr/local/bin/clustalw2/clustalw directly? 

chris

On Sep 5, 2012, at 10:41 AM, Gustav Ahlberg <ahlberg.gustav at gmail.com>
 wrote:

> Hi!
> I am trying to run clustalw2 through bioperl. It is not working.
> 
> I have tried exporting the path etc etc. clustalw2 is executable in the
> terminal. I have included BEGIN { $ENV{CLUSTALDIR} = '
> /usr/local/bin/clustalw2/'} in each of my script. What is wrong here.
> Thanks in advance for your answer.
> 
> Best Gustav
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