[Bioperl-l] Clustalw alignment parsing

Antonio Nhani Jr antonio.nhanijr at gmail.com
Thu Sep 27 04:39:41 EDT 2012

Hi All,

I need to parse a several seqs clustalw alignment file, searching for regions to design primers (preference for not degenerated).
The amplified region must have base(s) differences, to identify each seq.
Haven't found a method in Bio::SimpleAlignIO to do this…

Any hint?

All the very best,


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