BioPerl publications/pre2002

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  1. Kraemer ET and Ferrin TE. Molecules to maps: tools for visualization and interaction in support of computational biology. Bioinformatics. 1998;14(9):764-71. PubMed ID:9918946 | HubMed [kraemer1998]
  2. Chervitz SA, Fuellen G, Dagdigian C, Brenner SE, Birney E, Korf I, Bioperl: Standard Perl modules for Bioinformatics 1999 BITS J. 1. (journal longer available) [bits1999]
  3. Pocock M, Down T, Hubbard T BioJava: open source components for bioinformatics 2000 ACM SIGBIO Newsletter 20(2):10-12. [biojava2000]
  4. Stajich JE and Birney E The Bioperl project: motivation and usage ACM SIGBIO Newsletter 2000 20(2):13-14. [bioperl2000]
  5. Chapman B, Chang J Biopython: Python tools for computational biology 2000 ACM SIGBIO Newsletter 20(2):15-19. [bipython2000]
  6. Ramu C, Gemünd C, and Gibson TJ. Object-oriented parsing of biological databases with Python. Bioinformatics. 2000 Jul;16(7):628-38. PubMed ID:11038333 | HubMed [ramu2000]
  7. Achard F, Vaysseix G, and Barillot E. XML, bioinformatics and data integration. Bioinformatics. 2001 Feb;17(2):115-25. PubMed ID:11238067 | HubMed [achard2001]
  8. Stein L. Genome annotation: from sequence to biology. Nat Rev Genet. 2001 Jul;2(7):493-503. DOI:10.1038/35080529 | PubMed ID:11433356 | HubMed [stein2001]
  9. Ramu C. SIR: a simple indexing and retrieval system for biological flat file databases. Bioinformatics. 2001 Aug;17(8):756-8. PubMed ID:11524384 | HubMed [ramu2001]
  10. Wong RK, Shui WM Utilizing Multiple Bioinformatics Information Sources: An XML Database Approach 2001 Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering. [wong2001]
  11. Rubin E, Lithwick G, and Levy AA. Structure and evolution of the hAT transposon superfamily. Genetics. 2001 Jul;158(3):949-57. PubMed ID:11454746 | HubMed [rubin2001]
  12. Gavaghan H A permanent education 2001 Nature 413(6858):4-5. [gavaghan2001]
  13. Hoskins J, Alborn WE Jr, Arnold J, Blaszczak LC, Burgett S, DeHoff BS, Estrem ST, Fritz L, Fu DJ, Fuller W, Geringer C, Gilmour R, Glass JS, Khoja H, Kraft AR, Lagace RE, LeBlanc DJ, Lee LN, Lefkowitz EJ, Lu J, Matsushima P, McAhren SM, McHenney M, McLeaster K, Mundy CW, Nicas TI, Norris FH, O'Gara M, Peery RB, Robertson GT, Rockey P, Sun PM, Winkler ME, Yang Y, Young-Bellido M, Zhao G, Zook CA, Baltz RH, Jaskunas SR, Rosteck PR Jr, Skatrud PL, and Glass JI. Genome of the bacterium Streptococcus pneumoniae strain R6. J Bacteriol. 2001 Oct;183(19):5709-17. DOI:10.1128/JB.183.19.5709-5717.2001 | PubMed ID:11544234 | HubMed [hoskins2001]
  14. Fuellen G, Wägele JW, and Giegerich R. Minimum conflict: a divide-and-conquer approach to phylogeny estimation. Bioinformatics. 2001 Dec;17(12):1168-78. PubMed ID:11751225 | HubMed [fuellen2001]
  15. Riikonen P, Boberg J, Salakoski T, and Vihinen M. BioWAP, mobile Internet service for bioinformatics. Bioinformatics. 2001 Sep;17(9):855-6. PubMed ID:11590108 | HubMed [biowap]
All Medline abstracts: PubMed | HubMed
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