Module:Bio::AlignIO::stockholm

From BioPerl

Jump to: navigation, search

Pdoc documentation: Bio::AlignIO::stockholm CPAN documentation: Bio::AlignIO::stockholm

Introduction

This module provides a parser for stockholm format.

TODO

Right now, to get something into this format you will probably want to use sreformat part of SQUID package. However, most data is parsed into various Bio::AnnotationI and Bio::Seq::Meta objects and added to the Bio::AnnotatableI Bio::SimpleAlign object. Also, an write_aln() function is now implemented which creates annotated output.

Retrieved from "http://bioperl.org/wiki/Module:Bio::AlignIO::stockholm"
Personal tools