Module:Bio::SearchIO::blast

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Bio::SearchIO::blast
PDoc Bio::SearchIO::blast
CPAN Bio::SearchIO::blast
metaCPAN Bio::SearchIO::blast


This module is a plug-in for the Bio::SearchIO system and provides the regular expressions and parsing of BLAST reports. This includes the many flavors of BLAST including WU-BLAST, NCBI-BLAST, Paracel/TimeLogic results, BLAT's BLAST-like output. XML output from NCBI-BLAST is parsed with Bio::SearchIO::blastxml and tabular (-m 9 or -m 8) output is parsed with Bio::SearchIO::blasttable.

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