Module:Bio::Tools::Run::Blast::RemoteNCBI

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Bio::Tools::Run::Blast::RemoteNCBI
PDoc Bio::Tools::Run::Blast::RemoteNCBI
CPAN Bio::Tools::Run::Blast::RemoteNCBI
metaCPAN Bio::Tools::Run::Blast::RemoteNCBI


Contents

Purpose

Submit and retrieve BLAST jobs from an NCBI style CGI script (WebBlast)

Status

This module is in development. Documentation is not yet available.

Comments

The new module will be a "pure perl" implementation, but will be limited to XML formatted results only.

The modules in the Bio::Tools::Run::Blast family may include:

 --> StandAlone     (support for both WU-BLAST and NCBI-BLAST local binaries and 
                     eventually MPI-BLAST too)
 --> RemoteNCBI     (currently the RemoteBlast server)
 --> RemoteEBISOAP  (EBI has a nice SOAP interface that works quite well, but 
                     may not provide all the same databases as what people expect 
                     from NCBI)
 --> RemoteNetBlast (blastcl3 or netblast local executable)

Authors

This module is being developed by Roger Hall based on Module:Bio::Tools::Run::RemoteBlast by Jason Stajich.

The module should be available by 080101.

Bugs

Please report bugs to bugzilla.

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