Module:Bio::TreeIO

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Bio::TreeIO
PDoc Bio::TreeIO
CPAN Bio::TreeIO
metaCPAN Bio::TreeIO


This module is a factory for reading and writing phylogentic trees. Several of the formats supported include

Format Driver module Description
Newick tree format Bio::TreeIO::newick also known as New Hampshire format
Nexus tree format Bio::TreeIO::nexus NEXUS format from PAUP and MrBayes
New Hampshire extended tree format Bio::TreeIO::nhx Christian Zmeck's format for ATV and Forester
Lintree tree format Bio::TreeIO::lintree Lintree format
Treecluster tree format Bio::TreeIO::treecluster Algorithm::Cluster::treecluster format
Pagel tree format Bio::TreeIO::pag Pagel format for Discrete (This module may not totally work!)
Tab tree format Bio::TreeIO::tab Jason Stajich's somewhat arbitrary tree visualization format (output only)
SVG tree format Bio::TreeIO::svggraph Allen Day's SVG output format
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