TribeMCL

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Stijn van Dongen's Markov Cluster Algorithm package available here. This package provides tools for cluster gene families from sequence similarity searches like BLAST or FASTA [1].

References

  1. Enright AJ, Van Dongen S, and Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 2002 Apr 1;30(7):1575-84. PubMed ID:11917018 | HubMed [tribemcl]
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