AGAVE - Architecture for Genomic Annotation, Visualization and Exchange - is an XML format developed by “DoubleTwist” (now defunct of genomic sequences.
<bio_sequence seq_length="11727"
molecule_type="DNA"
organism_name="Homo sapiens" t
axon_id="9606"
clone_id="RP11-17E16"
clone_library="RPCI-11 Human Male BAC" chromosome="8 (Fingerprint)">
<db_id id="AC011652F7" version="AC011652F7.4" db_code="gb"/>
<description>Homo sapiens clone RP11-17E16, WORKING DRAFT SEQUENCE,
10 unordered pieces.</description>
<keyword>HTGS_PGD; HTG; HTGS_PHASE1; HTGS_DRAFT.</keyword>
<sequence>
caactctggtggtttggggctttggcatctaaactcttaggaaaaaggcacggtctcccttgacctttgtc
...
</sequence>
<xrefs>
<xref>
<db_id id="9606" db_code="taxon"/>
</xref>
<xref>
<db_id id="AC011652" db_code="gb"/>
</xref>
</xrefs>
<sequence_map label="GenBank Annotations">
<annotations>
...
</annotations>
</sequence_map>
<map_location map_type="radiation_hybrid" source="washu" units="cR"
chromosome="8">
<map_position pos="498.92"/>
</map_location>
<map_location map_type="fingerprint" source="washu" units="kb"
chromosome="8">
<map_position pos="8748">
<db_id id="ctg17944" db_code="washu_ctg"/>
</map_position>
</map_location>
</bio_sequence>